PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim01g096810.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

EIL

Protein Properties

Length: 602aa MW: 67879.5 Da PI: 5.1625

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim01g096810.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	513.4	1e-156	47	422	1	354
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsL 91 eel++rmw+d+mll+rlke++k+++ + + +k+++s+eqarrkkmsraQDgiLkYMlk+mevcnaqGfvYgiipekgkpv+gasd+L Sopim01g096810.0.1 47 EELERRMWRDRMLLRRLKEKNKNKV----V-GDGAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCNAQGFVYGIIPEKGKPVTGASDNL 132 8*******************965....4.677899************************************************** PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHH CS EIN3 92 raWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwg 182 raWWkekv+fdrngpaai+kyqa+n i+++ +++++ s++h+l+elqDTtlgSLLsalmqhcdppqrrfplekgv+pPWWP+Gke+wwg Sopim01g096810.0.1 133 RAWWKEKVRFDRNGPAAIAKYQADNQIPGRVEESSV-IVSTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPSGKEEWWG 222 **************************999988.************************************************** PP HHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX...XXXXX CS EIN3 183 elglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss...slrkq 270 +lgl++dq +ppykkphdlkkawkv+vLtavikh+sp+i++ir+l+rqsk+lqdkm+akes+++l+++nqee+++++++++s sl + Sopim01g096810.0.1 223 QLGLPNDQVQPPYKKPHDLKKAWKVGVLTAVIKHISPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARKLYPDSYpqgSLAVG 313 ******************************************************************************444579999 PP XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX.............................XXXXXXXXXXXXXXXXXXXXX......XXX CS EIN3 271 spkvtlsceqkedvegkkeskikhvqavktta.............................gfpvvrkrkkkpsesakvsskevsrtcqss 332 + ++++s+ +++dveg ++++ ++v++ k ++ + ++++krk +p +++v +k ++tc+ Sopim01g096810.0.1 314 NGSFFISDASDYDVEGVDNERNNEVEC-KPHDinlqtgimlpkdrvlmpglapvkgeiidlTSDFIQKRK-EPCFEESVDQK--IYTCEYL 400 *************666666455555.444558*******************************9.89999999888..7** PP XXXX.XXXXXXXXXXXXXXXXX CS EIN3 333 qfrgsetelifadknsisqney 354 ++++s+++++f d++s++++++ Sopim01g096810.0.1 401 HCPYSNYQAGFLDRTSRNNHQM 422 ******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	4.9E-129	47	294	No hit	No description
Gene3D	G3DSA:1.10.3180.10	1.0E-74	168	303	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	3.27E-61	173	297	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence Send to blast
MGIFEDMGFS GNFEFLSDSM GCGAQEVEHK PVGLEEDDYS DEEMDVEELE RRMWRDRMLL 60 RRLKEKNKNK VVGDGAKQRQ SQEQARRKKM SRAQDGILKY MLKMMEVCNA QGFVYGIIPE 120 KGKPVTGASD NLRAWWKEKV RFDRNGPAAI AKYQADNQIP GRVEESSVIV STPHTLQELQ 180 DTTLGSLLSA LMQHCDPPQR RFPLEKGVSP PWWPSGKEEW WGQLGLPNDQ VQPPYKKPHD 240 LKKAWKVGVL TAVIKHISPD IAKIRKLVRQ SKCLQDKMTA KESATWLAII NQEEALARKL 300 YPDSYPQGSL AVGNGSFFIS DASDYDVEGV DNERNNEVEC KPHDINLQTG IMLPKDRVLM 360 PGLAPVKGEI IDLTSDFIQK RKEPCFEESV DQKIYTCEYL HCPYSNYQAG FLDRTSRNNH 420 QMSCPFRFNS AQTLTTPKYQ INYEHNTVFP AQTATSKPAV SSVTASSSMS ASGLGLPEDD 480 QRIISDLITS YDNNFQQNGS ICSGISEILV NQSLPQQQTV ELPMDGNINL GHMETSAQET 540 SMPVYRSTEF QYDQCKMSFD APFGGNINDI TDYRFGSPFN LGGSDYAVEQ LTKQDISTWY 600 L*

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence Send to blast

MGIFEDMGFS GNFEFLSDSM GCGAQEVEHK PVGLEEDDYS DEEMDVEELE RRMWRDRMLL  60
RRLKEKNKNK VVGDGAKQRQ SQEQARRKKM SRAQDGILKY MLKMMEVCNA QGFVYGIIPE  120
KGKPVTGASD NLRAWWKEKV RFDRNGPAAI AKYQADNQIP GRVEESSVIV STPHTLQELQ  180
DTTLGSLLSA LMQHCDPPQR RFPLEKGVSP PWWPSGKEEW WGQLGLPNDQ VQPPYKKPHD  240
LKKAWKVGVL TAVIKHISPD IAKIRKLVRQ SKCLQDKMTA KESATWLAII NQEEALARKL  300
YPDSYPQGSL AVGNGSFFIS DASDYDVEGV DNERNNEVEC KPHDINLQTG IMLPKDRVLM  360
PGLAPVKGEI IDLTSDFIQK RKEPCFEESV DQKIYTCEYL HCPYSNYQAG FLDRTSRNNH  420
QMSCPFRFNS AQTLTTPKYQ INYEHNTVFP AQTATSKPAV SSVTASSSMS ASGLGLPEDD  480
QRIISDLITS YDNNFQQNGS ICSGISEILV NQSLPQQQTV ELPMDGNINL GHMETSAQET  540
SMPVYRSTEF QYDQCKMSFD APFGGNINDI TDYRFGSPFN LGGSDYAVEQ LTKQDISTWY  600
L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4zds_A	7e-82	171	304	1	134	Protein ETHYLENE INSENSITIVE 3
4zds_B	7e-82	171	304	1	134	Protein ETHYLENE INSENSITIVE 3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor acting as a positive regulator in the ethylene response pathway. Is required for ethylene responsiveness in adult plant tissues. Binds a primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter with consequence to activate the transcription of this gene. {ECO:0000269\|PubMed:9215635, ECO:0000269\|PubMed:9851977}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF328786	0.0	AF328786.1 Lycopersicon esculentum EIL3 (EIL3) mRNA, complete cds.
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234546.1	0.0	protein EIN3-like3
Swissprot	O24606	0.0	EIN3_ARATH; Protein ETHYLENE INSENSITIVE 3
TrEMBL	Q94FV2	0.0	Q94FV2_SOLLC; EIL3
STRING	Solyc01g096810.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA304	23	178

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20770.1	0.0	EIL family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kim HG, et al. GDSL LIPASE1 modulates plant immunity through feedback regulation of ethylene signaling. Plant Physiol., 2013. 163(4): p. 1776-91 [PMID:24170202] Zhong S, et al. Ethylene-orchestrated circuitry coordinates a seedling's response to soil cover and etiolated growth. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(11): p. 3913-20 [PMID:24599595] Kim HG, et al. GDSL lipase 1 regulates ethylene signaling and ethylene-associated systemic immunity in Arabidopsis. FEBS Lett., 2014. 588(9): p. 1652-8 [PMID:24631536] Jourda C, et al. Expansion of banana (Musa acuminata) gene families involved in ethylene biosynthesis and signalling after lineage-specific whole-genome duplications. New Phytol., 2014. 202(3): p. 986-1000 [PMID:24716518] Zhang GB,Yi HY,Gong JM The Arabidopsis ethylene/jasmonic acid-NRT signaling module coordinates nitrate reallocation and the trade-off between growth and environmental adaptation. Plant Cell, 2014. 26(10): p. 3984-98 [PMID:25326291] Wang J, et al. Arabidopsis ROOT HAIR DEFECTIVE3 is involved in nitrogen starvation-induced anthocyanin accumulation. J Integr Plant Biol, 2015. 57(8): p. 708-21 [PMID:25494721] Ge XM, et al. Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis. Plant J., 2015. 82(1): p. 138-50 [PMID:25704455] Kazan K Diverse roles of jasmonates and ethylene in abiotic stress tolerance. Trends Plant Sci., 2015. 20(4): p. 219-29 [PMID:25731753] Yang C, et al. MAOHUZI6/ETHYLENE INSENSITIVE3-LIKE1 and ETHYLENE INSENSITIVE3-LIKE2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice. Plant Physiol., 2015. 169(1): p. 148-65 [PMID:25995326] Contreras-Cornejo HA, et al. Mitogen-Activated Protein Kinase 6 and Ethylene and Auxin Signaling Pathways Are Involved in Arabidopsis Root-System Architecture Alterations by Trichoderma atroviride. Mol. Plant Microbe Interact., 2015. 28(6): p. 701-10 [PMID:26067203] Li J,Xu HH,Liu WC,Zhang XW,Lu YT Ethylene Inhibits Root Elongation during Alkaline Stress through AUXIN1 and Associated Changes in Auxin Accumulation. Plant Physiol., 2015. 168(4): p. 1777-91 [PMID:26109425] Street IH, et al. Ethylene Inhibits Cell Proliferation of the Arabidopsis Root Meristem. Plant Physiol., 2015. 169(1): p. 338-50 [PMID:26149574] Ju C,Chang C Mechanistic Insights in Ethylene Perception and Signal Transduction. Plant Physiol., 2015. 169(1): p. 85-95 [PMID:26246449] Qing D, et al. Quantitative and Functional Phosphoproteomic Analysis Reveals that Ethylene Regulates Water Transport via the C-Terminal Phosphorylation of Aquaporin PIP2;1 in Arabidopsis. Mol Plant, 2016. 9(1): p. 158-174 [PMID:26476206] Zhang Y,Liu J,Chai J,Xing D Mitogen-activated protein kinase 6 mediates nuclear translocation of ORE3 to promote ORE9 gene expression in methyl jasmonate-induced leaf senescence. J. Exp. Bot., 2016. 67(1): p. 83-94 [PMID:26507893] Li X,Pan Y,Chang B,Wang Y,Tang Z NO Promotes Seed Germination and Seedling Growth Under High Salt May Depend on EIN3 Protein in Arabidopsis. Front Plant Sci, 2015. 6: p. 1203 [PMID:26779234] Yu Y, et al. Salt Stress and Ethylene Antagonistically Regulate Nucleocytoplasmic Partitioning of COP1 to Control Seed Germination. Plant Physiol., 2016. 170(4): p. 2340-50 [PMID:26850275] Pelagio-Flores R,Ruiz-Herrera LF,López-Bucio J Serotonin modulates Arabidopsis root growth via changes in reactive oxygen species and jasmonic acid-ethylene signaling. Physiol Plant, 2016. 158(1): p. 92-105 [PMID:26864878] Tao S, et al. The THO/TREX Complex Active in miRNA Biogenesis Negatively Regulates Root-Associated Acid Phosphatase Activity Induced by Phosphate Starvation. Plant Physiol., 2016. 171(4): p. 2841-53 [PMID:27329222] Song L, et al. The Molecular Mechanism of Ethylene-Mediated Root Hair Development Induced by Phosphate Starvation. PLoS Genet., 2016. 12(7): p. e1006194 [PMID:27427911] Jeong J, et al. Phytochrome and Ethylene Signaling Integration in Arabidopsis Occurs via the Transcriptional Regulation of Genes Co-targeted by PIFs and EIN3. Front Plant Sci, 2016. 7: p. 1055 [PMID:27486469] Tsai KJ,Lin CY,Ting CY,Shih MC Ethylene-Regulated Glutamate Dehydrogenase Fine-Tunes Metabolism during Anoxia-Reoxygenation. Plant Physiol., 2016. 172(3): p. 1548-1562 [PMID:27677986] Zhang F, et al. EIN2-dependent regulation of acetylation of histone H3K14 and non-canonical histone H3K23 in ethylene signalling. Nat Commun, 2016. 7: p. 13018 [PMID:27694846] Liu G, et al. Local Transcriptional Control of YUCCA Regulates Auxin Promoted Root-Growth Inhibition in Response to Aluminium Stress in Arabidopsis. PLoS Genet., 2016. 12(10): p. e1006360 [PMID:27716807] Shen X,Li Y,Pan Y,Zhong S Activation of HLS1 by Mechanical Stress via Ethylene-Stabilized EIN3 Is Crucial for Seedling Soil Emergence. Front Plant Sci, 2016. 7: p. 1571 [PMID:27822221] Shi H, et al. The Red Light Receptor Phytochrome B Directly Enhances Substrate-E3 Ligase Interactions to Attenuate Ethylene Responses. Dev. Cell, 2016. 39(5): p. 597-610 [PMID:27889482] Wawrzyńska A,Sirko A EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor. Plant Sci., 2016. 253: p. 50-57 [PMID:27968996] Zemlyanskaya EV,Levitsky VG,Oshchepkov DY,Grosse I,Mironova VV The Interplay of Chromatin Landscape and DNA-Binding Context Suggests Distinct Modes of EIN3 Regulation in Arabidopsis thaliana. Front Plant Sci, 2016. 7: p. 2044 [PMID:28119721] He X,Jiang J,Wang CQ,Dehesh K ORA59 and EIN3 interaction couples jasmonate-ethylene synergistic action to antagonistic salicylic acid regulation of PDF expression. J Integr Plant Biol, 2017. 59(4): p. 275-287 [PMID:28168848] Abozeid A, et al. Ethylene Improves Root System Development under Cadmium Stress by Modulating Superoxide Anion Concentration in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 253 [PMID:28286514] Quan R, et al. EIN3 and SOS2 synergistically modulate plant salt tolerance. Sci Rep, 2017. 7: p. 44637 [PMID:28300216] Kim GD,Cho YH,Yoo SD Regulatory Functions of Cellular Energy Sensor SNF1-Related Kinase1 for Leaf Senescence Delay through ETHYLENE- INSENSITIVE3 Repression. Sci Rep, 2017. 7(1): p. 3193 [PMID:28600557] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Liu X,Li Y,Zhong S Interplay between Light and Plant Hormones in the Control of Arabidopsis Seedling Chlorophyll Biosynthesis. Front Plant Sci, 2017. 8: p. 1433 [PMID:28861105] Zhang F, et al. EIN2 mediates direct regulation of histone acetylation in the ethylene response. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(38): p. 10274-10279 [PMID:28874528] Yan Z, et al. Type B Response Regulators Act As Central Integrators in Transcriptional Control of the Auxin Biosynthesis Enzyme TAA1. Plant Physiol., 2017. 175(3): p. 1438-1454 [PMID:28931628] Liu X, et al. EIN3 and PIF3 Form an Interdependent Module That Represses Chloroplast Development in Buried Seedlings. Plant Cell, 2017. 29(12): p. 3051-3067 [PMID:29114016] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944] Harkey AF, et al. Identification of Transcriptional and Receptor Networks That Control Root Responses to Ethylene. Plant Physiol., 2018. 176(3): p. 2095-2118 [PMID:29259106] Zhang F,Wang L,Ko EE,Shao K,Qiao H Histone Deacetylases SRT1 and SRT2 Interact with ENAP1 to Mediate Ethylene-Induced Transcriptional Repression. Plant Cell, 2018. 30(1): p. 153-166 [PMID:29298835] Lv B, et al. Brassinosteroids regulate root growth by controlling reactive oxygen species homeostasis and dual effect on ethylene synthesis in Arabidopsis. PLoS Genet., 2018. 14(1): p. e1007144 [PMID:29324765] Dou L,He K,Higaki T,Wang X,Mao T Ethylene Signaling Modulates Cortical Microtubule Reassembly in Response to Salt Stress. Plant Physiol., 2018. 176(3): p. 2071-2081 [PMID:29431630] Meng LS,Xu MK,Wan W,Wang JY Integration of Environmental and Developmental (or Metabolic) Control of Seed Mass by Sugar and Ethylene Metabolisms in Arabidopsis. J. Agric. Food Chem., 2018. 66(13): p. 3477-3488 [PMID:29528636] Munné-Bosch S,Simancas B,Müller M Ethylene signaling cross-talk with other hormones in Arabidopsis thaliana exposed to contrasting phosphate availability: Differential effects in roots, leaves and fruits. J. Plant Physiol., 2018. 226: p. 114-122 [PMID:29758376]