PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g098070.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 156aa    MW: 17181.7 Da    PI: 9.9341
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g098070.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.51.5e-121259249
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        +i  ++ r v fskRr+g++ KAeEL  +    v  +++s+ gk y+y
  Sopim01g098070.0.1 12 KITKQTARMVAFSKRRKGLFRKAEELESMSSSHVTSVVISPFGKPYTY 59
                        68999******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.923363IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-13362IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-16472IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-11525IPR002100Transcription factor, MADS-box
PfamPF003192.2E-161259IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-112540IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-114061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MGTGKKKIEI EKITKQTARM VAFSKRRKGL FRKAEELESM SSSHVTSVVI SPFGKPYTYG  60
NVNSVIKKYF SICIRPEIST PVMNSHPSSS NVSGESLGSK SSSTPNGNAL CNWVEGIDVE  120
ECQNLNQLLM LKKQLEGTRE KIVSKESESF QALFI*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231250.11e-109agamous-like MADS-box protein AGL61
TrEMBLA0A3Q7EMH51e-107A0A3Q7EMH5_SOLLC; Uncharacterized protein
STRINGSolyc01g098070.1.11e-108(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.11e-11M-type_MADS family protein