PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g100220.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 150aa    MW: 16112.9 Da    PI: 10.6253
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g100220.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.61.1e-202155135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        Cs C+ttkTplWR+gp+g+k+LCnaCG++yrkk++
  Sopim01g100220.0.1 21 CSDCKTTKTPLWRSGPSGPKSLCNACGIKYRKKKS 55
                        ********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.23E-141555No hitNo description
SMARTSM004011.1E-161566IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.021551IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-171955IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.43E-152071No hitNo description
PfamPF003201.3E-182154IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402146IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MDPNQKDESS GSEATGISKS CSDCKTTKTP LWRSGPSGPK SLCNACGIKY RKKKSSPIGL  60
TKGATKKKEK PLSNSGSTEE VEYCKKGKMG NGKKDGKLSK VLRVKLMMLG KEVVILQRQR  120
SAMKKPRKLD EVERAAVLLM ALSCGSVFG*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2385030.0AC238503.9 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-10f3 map 1, complete sequence.
GenBankAC2389200.0AC238920.12 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-222e21 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230282.11e-102GATA transcription factor 16
TrEMBLA0A3Q7F8I61e-101A0A3Q7F8I6_SOLLC; Uncharacterized protein
STRINGSolyc01g100220.2.11e-102(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127501721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.15e-24GATA transcription factor 16