PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g103870.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 126aa    MW: 14435.6 Da    PI: 9.5372
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g103870.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.25.1e-141662450
                        -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        + k+n++ ++  R++ i  K  EL +LCd++v+ +i +++ +l++++
  Sopim01g103870.0.1 16 KKKTNNSKSYQVRKECIKRKSMELATLCDIKVCTVITGPNRELQTWP 62
                        5799******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554558.37E-151188IPR002100Transcription factor, MADS-box
PROSITE profilePS500668.8581661IPR002100Transcription factor, MADS-box
PfamPF003191.3E-91761IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MADEDQSKKG EEDQRKKKTN NSKSYQVRKE CIKRKSMELA TLCDIKVCTV ITGPNRELQT  60
WPDNLNACKE VLDIYSQNLK PEKKHKQEDK DLPTLVESKL AAVNRRICFL ENKNVADKGK  120
GKRIE*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2461050.0AC246105.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-15l21 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015082095.22e-78agamous-like MADS-box protein AGL75
TrEMBLM1CBP77e-65M1CBP7_SOLTU; Uncharacterized protein
STRINGSolyc01g103870.1.12e-86(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37231639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39810.13e-10AGAMOUS-like 98