PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g106460.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 244aa    MW: 27055.1 Da    PI: 7.8995
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g106460.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.4e-1363110355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  Sopim01g106460.0.1  63 QDHIIAERKRREKLSQRFIALSALIPGL-----KKMDKASVLGDAIKYLKQLQ 110
                         6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.82160109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-1163110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1764126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1764122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.63E-1365114No hitNo description
SMARTSM003534.8E-1566115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MKPKEETTNL SSSSITFAAD HCHNNMVCHQ DSFANQNYMM FKAASCQGAN KSVSTNGKLT  60
QAQDHIIAER KRREKLSQRF IALSALIPGL KKMDKASVLG DAIKYLKQLQ EKVKTLEEQT  120
KKKSVESVVF VKKYELYGDG ENSSSDENYS SGTVPVDEAL PEIEARISEK DVLIRIHCEK  180
SKGVVEKTVA EIEKLHLSVI NTCALSFGTS ALDITIIAQM DEEFAMTVKD LVKNLRSALK  240
VFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-1564113857Transcription factor MYC2
5gnj_B9e-1564113857Transcription factor MYC2
5gnj_E9e-1564113857Transcription factor MYC2
5gnj_F9e-1564113857Transcription factor MYC2
5gnj_G9e-1564113857Transcription factor MYC2
5gnj_I9e-1564113857Transcription factor MYC2
5gnj_M9e-1564113857Transcription factor MYC2
5gnj_N9e-1564113857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16873ERKRRE
26974RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2389280.0AC238928.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-79n4 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230658.11e-178transcription factor bHLH18-like
SwissprotQ9T0722e-65BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A3Q7ERR21e-177A0A3Q7ERR2_SOLLC; Uncharacterized protein
STRINGSolyc01g106460.2.11e-180(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-60bHLH family protein