PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g107170.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 311aa    MW: 32928 Da    PI: 7.5339
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g107170.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00048135157123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C+k+F++   L  H  +H
  Sopim01g107170.0.1 135 FRCSECPKVFTSYQALGGHKASH 157
                         89**********99999998877 PP
2zf-C2H213.60.00019195217123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C k F++   L  H r+H
  Sopim01g107170.0.1 195 HVCSICQKAFPTGQALGGHKRRH 217
                         79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.09E-8134157No hitNo description
SMARTSM003550.015135157IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-12135159IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889135157IPR007087Zinc finger, C2H2
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
SuperFamilySSF576671.09E-8190217No hitNo description
SMARTSM003550.056195217IPR015880Zinc finger, C2H2-like
PfamPF139124.2E-11195219IPR007087Zinc finger, C2H2
PROSITE profilePS501579.64195222IPR007087Zinc finger, C2H2
PROSITE patternPS000280197217IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSIEALKSPM AAKLSPTVAE LPPLEEIDDD SHNLDSWAKG KRSKRPRIEN PPTRDQYLAL  60
CLLMLANDDG TGFGKGKGNG TGSIGVEQTE KKPAELKPVF IEEKTEQLLK PVVDKEKTEQ  120
LLKPVVVKEK TEQLFRCSEC PKVFTSYQAL GGHKASHRKI NVPATGDDDS NPSTSTSTSG  180
GGVNISALNP SGRSHVCSIC QKAFPTGQAL GGHKRRHYEG KLGGNNRYIG GGGEGGGVHS  240
GSVVTTSDGG SGNGGGGAST PIARDFDLNM PASPGWQLDL TIDCGGRTQH PIEQEVESPM  300
PAKKPRLFFE *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0133360.0BT013336.1 Lycopersicon esculentum clone 135126R, mRNA sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
GenBankHQ7383510.0HQ738351.1 Solanum lycopersicum ZF2 (ZF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266186.10.0ZF2 protein
TrEMBLI3NN780.0I3NN78_SOLLC; ZF2
STRINGSolyc01g107170.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.12e-28C2H2 family protein