PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g108140.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 225aa    MW: 25960.7 Da    PI: 8.9427
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g108140.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.91.2e-15129218198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k +++s+v+   +l lp +f+++h  k   +  +tl de+g +++ k+   k++    l++GW++++ +++L +gD +vF+l+  ++f 
  Sopim01g108140.0.1 129 FVKPMLQSHVTGGFWLGLPVHFCKTHLPK--HDEYITLVDENGDEFQTKYLALKTG----LSGGWRGYALDHELIDGDALVFQLVAPTRF- 212
                         89************************433..3347***************666666....***********************9986777. PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                          +v ++r
  Sopim01g108140.0.1 213 -KVYIIR 218
                         .888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.02E-23122220IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-19123220IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-26127218No hitNo description
PROSITE profilePS5086311.674129220IPR003340B3 DNA binding domain
SMARTSM010196.8E-20129220IPR003340B3 DNA binding domain
PfamPF023625.7E-14129218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAELEKKLTY EECRLKRIEE NKKRWQELKL TMLAEDVHNA TNPKPSPMKK AKPTVRQEVD  60
RSAVRRSNRV ADKPPPNYKE VPIEPLGRPR SYKRKDLLNR VYAADEDRQY AIGRAEQLQS  120
ELDVDFPSFV KPMLQSHVTG GFWLGLPVHF CKTHLPKHDE YITLVDENGD EFQTKYLALK  180
TGLSGGWRGY ALDHELIDGD ALVFQLVAPT RFKVYIIRVN QVED*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-113HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230784.11e-167B3 domain-containing protein At3g19184
RefseqXP_025884266.11e-167B3 domain-containing protein At3g19184
SwissprotQ1G3M32e-83Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A3Q7ESF51e-166A0A3Q7ESF5_SOLLC; Uncharacterized protein
STRINGSolyc01g108140.2.11e-167(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-86B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]