PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim01g110140.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

SRS

Protein Properties

Length: 207aa MW: 23206.8 Da PI: 8.018

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim01g110140.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	175.2	3.2e-54	17	151	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssae 95 +++CqdCGnqakkdC++ RCRtCCksrgf+C+thvkstWvp++ rr r++ l+ ++ ++++ ++ ++kr r++ + Sopim01g110140.0.1 17 SSRCQDCGNQAKKDCTYIRCRTCCKSRGFHCETHVKSTWVPVSTRRPRHHLLHHTTIQQQQLQNGPNPKRYRSN-----------E----V 92 579*******************************************99988877666555455555555443...........1....1 PP DUF702 96 skkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 e ++P evss+avfrc+rvss+d+ +++aYqt+v+i+Ghvf GiLydqG+++ Sopim01g110140.0.1 93 IGDDHEGGNFPGEVSSPAVFRCIRVSSIDNVVDQYAYQTSVKIAGHVFIGILYDQGPDN 151 223346788**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.6E-58	17	150	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.9E-27	20	61	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.1E-25	102	149	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MRREEEEEGR VSSSLSSSRC QDCGNQAKKD CTYIRCRTCC KSRGFHCETH VKSTWVPVST 60 RRPRHHLLHH TTIQQQQLQN GPNPKRYRSN EVIGDDHEGG NFPGEVSSPA VFRCIRVSSI 120 DNVVDQYAYQ TSVKIAGHVF IGILYDQGPD NESPRYNNYM AGESSSSGFQ LHQPLILPPT 180 TTTTSPPPST STYPNLFSAF NMPVQW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004231430.1	1e-152	protein SHI RELATED SEQUENCE 1 isoform X1
Swissprot	Q9XGX0	6e-47	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	M1D203	1e-97	M1D203_SOLTU; Uncharacterized protein
STRING	Solyc01g110140.2.1	1e-154	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	4e-44	SHI-related sequence 5

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]