 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim01g110470.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 314aa MW: 35546.2 Da PI: 9.8684 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim01g110470.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 306.8 | 7.7e-94 | 1 | 313 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkgyye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernka 73
mdd g+re r++ y +++++ +++++ + aerda+++ern a++ekk+a+aerd a +qrd+a+aer+ a
Sopim01g110470.0.1 1 MDDGGQREnrRHRMDYSkgcyapwnvvppyqmkDQEAFI--MNTKIRMVFAERDAAVEERNRAVIEKKEAYAERDFAIQQRDTAFAERDTA 89
899999888777775555999999999655443223444..7888988999**************************************** PP
GAGA_bind 74 lverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekka 164
+ erdn+++al + e +++ +l +gtk ++ +++++ +++ ++ r+ +a+pi+ +ea ++ ++k+++ +k +k a
Sopim01g110470.0.1 90 IKERDNAIAALHFLESTTNGSL---GCRTRGTKRPEQPKNHRNYNTDSVCI-NRDVPVADAFPISAISSEAAKALQVKRSKVNKGMSTKSA 176
*************998754433...33467888888666644445444444.589999999999999999998888885554444444444 PP
GAGA_bind 165 kkkkkksekskkkvkkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaR 254
k+++k ++k +++ +++ +++ skae++ dl +++++++Dest+P+PvC+CtG++rqCYkWG+GGWqS+CCtt +S yPLP+ +++r+aR
Sopim01g110470.0.1 177 KSPRK-TKKVNEDLNRHLSKDGSKAEWDAHDLgSIDQIQFDESTMPIPVCTCTGIPRQCYKWGSGGWQSSCCTTYLSEYPLPQLPNKRHAR 266
44444.6666777777777788**********88********************************************************* PP
GAGA_bind 255 iagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
++grKmS+++f++lL + a dls p+DLk++WAkHGtn+++ti+
Sopim01g110470.0.1 267 LGGRKMSGSVFSRLLTRFAVADRDLSMPIDLKTYWAKHGTNRYITIK 313
**********************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 314 aa
Download sequence Send
to blast |
MDDGGQRENR RHRMDYSKGC YAPWNVVPPY QMKDQEAFIM NTKIRMVFAE RDAAVEERNR 60
AVIEKKEAYA ERDFAIQQRD TAFAERDTAI KERDNAIAAL HFLESTTNGS LGCRTRGTKR 120
PEQPKNHRNY NTDSVCINRD VPVADAFPIS AISSEAAKAL QVKRSKVNKG MSTKSAKSPR 180
KTKKVNEDLN RHLSKDGSKA EWDAHDLGSI DQIQFDESTM PIPVCTCTGI PRQCYKWGSG 240
GWQSSCCTTY LSEYPLPQLP NKRHARLGGR KMSGSVFSRL LTRFAVADRD LSMPIDLKTY 300
WAKHGTNRYI TIK*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC239447 | 0.0 | AC239447.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-128j14 map 1, complete sequence. |
| GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
