PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim02g021330.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YC

Protein Properties

Length: 154aa MW: 17528.9 Da PI: 4.6735

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g021330.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	107.9	6e-34	33	132	1	96
NF-YC 1 qlksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql++fw++q ie++++fk nh lP ikk++k+ded +mi+ae+Pvll+k+celfi eltlrswl+a+e++++ lkk d+++++ +td Sopim02g021330.0.1 33 QLEMFWTNQrreIENDNEFKnNHLLPPNLIKKLMKTDEDDQMIAAESPVLLAKTCELFIQELTLRSWLNAQEKHQHILKKDDVTDVIIQTD 123 799***99999***77889************************************************************** PP NF-YC 88 ifdflvdiv 96 dfl+ +v Sopim02g021330.0.1 124 NLDFLLVVV 132 ***8666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.0E-20	44	148	IPR009072	Histone-fold
Pfam	PF00808	6.7E-14	57	116	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	5.4E-22	57	133	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MKNNFDKLVV NATQSSTHPT LAQLNIVKNK QEQLEMFWTN QRREIENDNE FKNNHLLPPN 60 LIKKLMKTDE DDQMIAAESP VLLAKTCELF IQELTLRSWL NAQEKHQHIL KKDDVTDVII 120 QTDNLDFLLV VVDDAIDGST PSIVPFYIAG GNN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	9e-25	40	132	2	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269\|PubMed:17322342}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004231647.1	1e-109	nuclear transcription factor Y subunit C-4-like
Swissprot	Q9FMV5	2e-32	NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A3Q7FGJ4	1e-108	A0A3Q7FGJ4_SOLLC; Uncharacterized protein
STRING	Solyc02g021330.1.1	1e-108	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12872	5	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	6e-32	nuclear factor Y, subunit C4

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Qi M, et al. QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests. Plant Biotechnol. J., 2019. 17(1): p. 252-263 [PMID:29878511]