PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim02g032000.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

M-type_MADS

Protein Properties

Length: 98aa MW: 10914.6 Da PI: 10.3557

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g032000.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	37.3	3.5e-12	15	59	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k ie+++ r v+fskR+++++ A+ + ++a+vav++fs+ gk Sopim02g032000.0.1 15 KLIESERARAVSFSKRKKTLFEDAKKFATQTGADVAVMLFSPGGK 59 569***************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	16.736	7	67	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.8E-17	7	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.09E-20	8	92	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.3E-8	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-16	17	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.3E-8	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.3E-8	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
MENVTKKGKQ KIEMKLIESE RARAVSFSKR KKTLFEDAKK FATQTGADVA VMLFSPGGKP 60 YSCGSTSVED IIENFLKMKV ADPRRHYAEG ESKVLRN*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	1e-158	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015064670.1	7e-59	agamous-like MADS-box protein AGL29
TrEMBL	A0A3Q7EX96	1e-58	A0A3Q7EX96_SOLLC; Uncharacterized protein
STRING	Solyc02g032000.1.1	2e-59	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1780	12	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36590.1	9e-18	M-type_MADS family protein