PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim02g032070.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Protein Properties

Length: 109aa MW: 11958.1 Da PI: 4.0335

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g032070.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.4	8e-16	7	68	34	99
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 t +l +sg++W v l +++++ ++ +GW +Fvk++ L++gD++vF++d + f v+vf++ Sopim02g032070.0.1 7 GTTVLVGPSGNVWPVDL--IQQDDGLFFNNGWVSFVKDHCLETGDSLVFRYDADLHF--IVQVFDE 68 478899*********..99999************************9886666..9999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	13.676	1	69	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	8.63E-19	5	74	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.4E-13	6	68	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.1E-17	6	71	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.83E-16	6	67	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
MEGGDSGTTV LVGPSGNVWP VDLIQQDDGL FFNNGWVSFV KDHCLETGDS LVFRYDADLH 60 FIVQVFDESS CDKEASYNTD CSQEATDLYN LALKKRDRGN SVLGNEKT*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019069240.1	2e-63	B3 domain-containing protein Os01g0723500-like
Refseq	XP_027772493.1	1e-63	B3 domain-containing protein Os01g0723500-like isoform X2
TrEMBL	A0A3Q7FHN5	3e-74	A0A3Q7FHN5_SOLLC; Uncharacterized protein
STRING	Solyc02g032070.1.1	5e-75	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9820	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34400.1	8e-10	B3 family protein