PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g061910.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 265aa    MW: 29913.8 Da    PI: 6.793
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g061910.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.47.6e-122111526128
                 NAM  26 kkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkya.tgkrknr..atksgyWkatgkdkevlskkgelvglkktLvfykgr 112
                          +      i+ vd+y   +P+++  +  a+ +e++ F++ +kk++ +gk+ nr  +   g Wk   ++k+v++ k++++g kkt+ f   +
  Sopim02g061910.0.1  21 VS----VQIQFVDLYGNnKPSQIFDT--ATATEYHVFTRLKKKKTgNGKNFNRgiVGGGGSWKGIDNSKPVYDWKRSVIGSKKTFRFE--E 103
                         33....2378899996548*999633..346789989887666654899****74445899**************************7..2 PP

                 NAM 113 apkgektdWvmheyrl 128
                         +    +  W+m+eyrl
  Sopim02g061910.0.1 104 N----NHVWIMKEYRL 115
                         2....458******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.6531141IPR003441NAC domain
SuperFamilySSF1019415.89E-166140IPR003441NAC domain
PfamPF023652.0E-66115IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MKINLTDEQL MLSLLKFVTG VSVQIQFVDL YGNNKPSQIF DTATATEYHV FTRLKKKKTG  60
NGKNFNRGIV GGGGSWKGID NSKPVYDWKR SVIGSKKTFR FEENNHVWIM KEYRLCDKAQ  120
NALIQSGRIQ EEFVVCRITR SVNSSSSNFV PISSSQPQQT VKSFSPDLGQ ISAAANVIPN  180
GNITQVSLVT EESKLRQGSV HQETPPDYDI TTYYKQLDAY AVSVLETMVP YIPEPLQEDE  240
VDSIPLFSED FYIGYTDLWL KNWQ*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2467430.0AC246743.7 Solanum lycopersicum strain Heinz 1706 chromosome 2 clone hba-11o22 map 2, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158228.15e-91PREDICTED: uncharacterized protein LOC107057785
TrEMBLA0A3Q7F0820.0A0A3Q7F082_SOLLC; Uncharacterized protein
STRINGSolyc02g061910.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041