PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g061990.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 179aa    MW: 19887.1 Da    PI: 10.2632
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g061990.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.16.8e-07155177628
                         HHHCHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   6 rerrkqkNReAArrsRqRKkaei 28 
                         + +r++kNRe+A r+R+RK+ ++
  Sopim02g061990.0.1 155 KNKRMIKNRESAARFRARKLTRM 177
                         579****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.6E-4155177No hitNo description
PROSITE patternPS000360157172IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MWSSSSEEHH QNHQNLATNS SSSSSSCSYN HPINPILSIT SKTMEEVWKD INLSCSRDAQ  60
NTSGMVLQDL LARPFANDPS TAAVTRAYGS PVPPPPVTML TLNSVPEFHF FSNLNPIRQN  120
QQKHISNDAL ASPAPGRKRH SESDNNNNNN SSELKNKRMI KNRESAARFR ARKLTRMN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010317247.11e-108bZIP transcription factor 27-like
TrEMBLA0A3Q7EYH31e-127A0A3Q7EYH3_SOLLC; Uncharacterized protein
STRINGSolyc02g061990.2.11e-128(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35722239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.14e-09basic region/leucine zipper motif 27