PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim02g069440.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 162aa MW: 17943.4 Da PI: 8.1266

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g069440.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	144	4.4e-45	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+C +dCv++pyfpa++p+kfanvhk+FGasnv+k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+ Sopim02g069440.0.1 11 PCAACKLLRRRCGHDCVFSPYFPADEPHKFANVHKVFGASNVSKMLQELPEHKRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDMLR 101 7**************************************************************************************** PP DUF260 92 aelallkee 100 ++la++++e Sopim02g069440.0.1 102 TQLAMTQAE 110 **99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.502	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.9E-45	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MKECGKNSSS PCAACKLLRR RCGHDCVFSP YFPADEPHKF ANVHKVFGAS NVSKMLQELP 60 EHKRGDAVSS MVYEANARVR DPVYGCVGAI SSLQQQIDML RTQLAMTQAE VVQLRLRQST 120 SITNSPPNSG SPIMGSQPKG YYHMDLDVDQ SNTFNEPMWP Y*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-47	7	127	7	127	LOB family transfactor Ramosa2.1
5ly0_B	4e-47	7	127	7	127	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	1e-178	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004233892.1	1e-120	LOB domain-containing protein 4
Swissprot	Q9SHE9	5e-63	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A3Q7F383	1e-119	A0A3Q7F383_SOLLC; Uncharacterized protein
STRING	Solyc02g069440.2.1	1e-119	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-65	LOB domain-containing protein 4