PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g070140.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 196aa    MW: 23428.5 Da    PI: 9.7105
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g070140.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.42.6e-101213211128
                 NAM  11 deelvveyLkkkvegkkleleevikev.diykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                         d++++++ + +k   +k+++   ++++ +i  + P+++ +++++ ++k++ + ++++k+++  + +  + ++g+Wk tgk  ++++ +++l
  Sopim02g070140.0.1  12 DKNMMDYVIDNKPFPHKHTI-MKVDDIyGIRMFTPSQIFQSTEEpKNKNVRYLITNQKNERARSSA-YKDSRGVWKFTGKIDSIFDPNKRL 100
                         55555554555544444444.2244544677889****7554442444444444444433333333.34568**************98888 PP

                 NAM 100 ...vglkktLvfykgrapkgektdWvmheyrl 128
                            v + + + +y +++++  k++W m ey +
  Sopim02g070140.0.1 101 lgyVKISRWFYYYGEKNKRIIKSEWHMREYYV 132
                         455556667888888999999*********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.2062154IPR003441NAC domain
SuperFamilySSF1019417.19E-1027148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDKINEYWKS TDKNMMDYVI DNKPFPHKHT IMKVDDIYGI RMFTPSQIFQ STEEPKNKNV  60
RYLITNQKNE RARSSAYKDS RGVWKFTGKI DSIFDPNKRL LGYVKISRWF YYYGEKNKRI  120
IKSEWHMREY YVTPTINSRY NVDKKGVIFV MMFKNQKRND NDNNIDQDDE TPGQLDDHQD  180
FVANQITQSL QGIHL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153610.0AC215361.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0026M05, complete sequence.
GenBankAC2154820.0AC215482.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLm0064E19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010317351.11e-142uncharacterized protein LOC101263670
TrEMBLA0A3Q7F2921e-141A0A3Q7F292_SOLLC; Uncharacterized protein
STRINGSolyc02g070140.1.11e-141(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2681322