PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g078810.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 485aa    MW: 54454.7 Da    PI: 10.8453
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g078810.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73e-09743138
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                        +++W t+E+++l  av+++G+++W+ +a+++   Rtl+
  Sopim02g078810.0.1  7 KMNWGTWEELILGSAVRRHGTRDWNVVASELR-ARTLY 43
                        689*****************************.99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-4741IPR009057Homeodomain-like
PfamPF002493.3E-7741IPR001005SANT/Myb domain
CDDcd001675.14E-4953No hitNo description
SMARTSM002972.8E-17253357IPR001487Bromodomain
CDDcd043691.55E-14256352No hitNo description
Gene3DG3DSA:1.20.920.105.0E-17256385IPR001487Bromodomain
SuperFamilySSF473702.62E-18258357IPR001487Bromodomain
PfamPF004391.5E-10262341IPR001487Bromodomain
PROSITE profilePS5001410.525268338IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MGVGVGKMNW GTWEELILGS AVRRHGTRDW NVVASELRAR TLYPHCFTPE ACKASALFEE  60
LRKRRVEELK RELVRSESSI GSLESKIERL QAERERSDQI DHGLSRTKSP APQTKSEDIE  120
SSVKEEAKDG LSAGSFTLDI RTNGSSESQV PTIPSATEAV VKLELSEFWG RDKAPSTSKV  180
PESANGNGGA VRKRRGKRRR KDTVWDAKEG SIEDSDNVCS TSLASTSHCK EVLTSCDQSN  240
RRSAASDHIV GLSRFRNDDL MRIFNSITQH EAAMVFRHRL DSQKRARYKK MIRRHMDIET  300
ARSRLANWSI RTPSELFRDF LLLANNAMVF YSKRTREYKA AMALRDIVTR AYREHYKGSY  360
HKATSSHLPL PIIGNPPGKP RSVRPRPSKE KLQAKYGNNI IAGTLGRQNH KPGDAADSKV  420
PSQTPSSAKK GFKRPGKIKC GSTTETVNPQ SKVQAKESSQ HNIKVKKEHR VKAVTKERKR  480
ARQK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193201RRGKRRRKD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153800.0AC215380.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0090O01, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232825.10.0uncharacterized protein LOC101260987
TrEMBLA0A3Q7F4890.0A0A3Q7F489_SOLLC; Uncharacterized protein
STRINGSolyc02g078810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55341924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.12e-13DNA-binding bromodomain-containing protein