PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g084420.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family DBB
Protein Properties Length: 89aa    MW: 9572.16 Da    PI: 5.5724
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g084420.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.11.8e-08433534
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                         C+ +e+  ++lfC  ++  lC+ C ++ H
  Sopim02g084420.0.1  4 LCDVCESAAAILFCAADEAALCRACDEKVH 33
                        7**************************999 PP
2zf-B_box28.72.8e-095284234
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeH 34
                        e ++C+ +e+ ++ ++Ce +++ lC +C +  H
  Sopim02g084420.0.1 52 EVPRCDICENSPAFFYCEVDGSSLCLQCDMMVH 84
                        789**************************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.3E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.139147IPR000315B-box-type zinc finger
CDDcd000213.40E-5345No hitNo description
PfamPF006437.4E-7342IPR000315B-box-type zinc finger
SuperFamilySSF578456.64E-54885No hitNo description
PROSITE profilePS501199.1295188IPR000315B-box-type zinc finger
SMARTSM003362.9E-45188IPR000315B-box-type zinc finger
PfamPF006431.1E-75184IPR000315B-box-type zinc finger
CDDcd000211.70E-55484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRACDE KVHMCNKLAS RHVRVGIAKP NEVPRCDICE  60
NSPAFFYCEV DGSSLCLQCD MMVHVGGK*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2327762e-47AC232776.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLm0132H19, complete sequence.
GenBankHG9754412e-47HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755142e-47HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066178.14e-59B-box zinc finger protein 19-like
SwissprotC0SVM53e-50BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A3Q7F7182e-57A0A3Q7F718_SOLLC; Uncharacterized protein
TrEMBLM0ZW203e-56M0ZW20_SOLTU; B-box zinc finger protein 23
STRINGSolyc02g084420.2.14e-58(Solanum lycopersicum)
STRINGPGSC0003DMT4000093284e-57(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-52DBB family protein