PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g086430.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 182aa    MW: 20469.2 Da    PI: 9.492
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g086430.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH49.66.2e-16106130226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ktelC+ +++tGtC+yG++C+FaHg
  Sopim02g086430.0.1 106 KTELCNKWQETGTCPYGENCQFAHG 130
                         9***********************8 PP
2zf-CCCH20.68e-07143168126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykte Cr  +++  C+yG rC+F H+
  Sopim02g086430.0.1 143 YKTEVCRMVLAGDMCPYGHRCHFRHS 168
                         9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.9E-19100137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-11101136IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-8104131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.117104132IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-13106130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-12138171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-9138171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.188142170IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5142169IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGVNRDTQIS DPRPPNIRQG SVVEPNRPER RNTERVSLPK SISVRSSGYL KLKAQGGNTG  60
GPSQAKARQK STVPPLTESQ QRVYVPGSKK EEEALEFDVY NQGMLKTELC NKWQETGTCP  120
YGENCQFAHG ITELRPVIRH PRYKTEVCRM VLAGDMCPYG HRCHFRHSLT EEERRTGPGL  180
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A5e-23106171570Butyrate response factor 2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153541e-172AC215354.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0011O23, complete sequence.
GenBankAC2154111e-172AC215411.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0180C05, complete sequence.
GenBankHG9754411e-172HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755141e-172HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233706.11e-134zinc finger CCCH domain-containing protein 14
RefseqXP_015065053.11e-134zinc finger CCCH domain-containing protein 14
SwissprotQ9C9N34e-61C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A3Q7F8611e-133A0A3Q7F861_SOLLC; Uncharacterized protein
STRINGSolyc02g086430.2.11e-133(Solanum lycopersicum)
STRINGPGSC0003DMT4000785831e-132(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77842129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-60C3H family protein