PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim02g090410.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 316aa MW: 35131.5 Da PI: 7.0166

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g090410.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.7	3.5e-42	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrrkC+++Cv+apyfp +qp kf nvhk+FGasnv+kll++l+ +reda++sl+yeAe r+rdPvyG+vg+i+ lqq+l+q++ Sopim02g090410.0.1 11 PCAACKFLRRKCTQECVFAPYFPPDQPLKFSNVHKVFGASNVSKLLNELNAAQREDAVNSLAYEAEYRLRDPVYGCVGLISLLQQKLRQVQ 101 7****************************************************************************************** PP DUF260 92 aelallkee 100 +l +++e Sopim02g090410.0.1 102 DDLLNARKE 110 *99888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.389	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-41	11	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MKKRMSSTNS PCAACKFLRR KCTQECVFAP YFPPDQPLKF SNVHKVFGAS NVSKLLNELN 60 AAQREDAVNS LAYEAEYRLR DPVYGCVGLI SLLQQKLRQV QDDLLNARKE LSTYIGPAGM 120 LPIANLQPPG FFQPQQQPMN APSSSTMSPF NMNPMSGMST GVPHGGPLLI RDPQQQQQQQ 180 LLQQPIQVQQ FITAIAAKEQ RDQQEMLKYY EQQEQQEDAV RFNSGFDSTG SVTATGFHQM 240 SSSIPPSLVL AGTYENPYNL VPPHQQSQPE QSLSYQQQVH LQSQQQLQPP QPPETPRQQP 300 RANSEEEGRG SGPSG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-48	7	124	7	125	LOB family transfactor Ramosa2.1
5ly0_B	8e-48	7	124	7	125	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226517	0.0	AC226517.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0056J19, complete sequence.
GenBank	AC232771	0.0	AC232771.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0115F06, complete sequence.
GenBank	AC232774	0.0	AC232774.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0056J10, complete sequence.
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004232054.1	0.0	LOB domain-containing protein 36-like
Refseq	XP_010316156.1	0.0	LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	6e-77	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A3Q7FBR0	0.0	A0A3Q7FBR0_SOLLC; Uncharacterized protein
STRING	Solyc02g090410.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	4e-74	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]