PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g090820.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 302aa    MW: 33257.3 Da    PI: 5.594
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g090820.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.82.8e-36101012102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+y++++d++++++isw+e g++fvv+++ efak++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g+ke
  Sopim02g090820.0.1  10 FLLKTYQLVDDATTDDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANENFKRGQKE 91 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll+ i+r+k+
  Sopim02g090820.0.1  92 LLTAIRRRKT 101
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.7E-38293IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.8E-59699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-33699IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.4E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-311099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSQRTAPAPF LLKTYQLVDD ATTDDVISWN EIGTTFVVWK TAEFAKDLLP KYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANENFKRGQK ELLTAIRRRK TVTSIPAGGK SVAAGTSASP  120
DNSGDDIGSS STSSPDSKNP GSVDTPGKLS QFTDLSDENE KLKKDNQMLS SELVQAKKQC  180
NELVAFLSQY VKVAPDMINR IMSQGTPSGS SLEELVKEVG GVKDLEEQGS YNDNDDKEDD  240
DEKGDTLKLF GVLLKEKKKK RGPDDNIETC GGRGKMMKTV DYNGPWMKMS STAGESSKVC  300
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-25610417125Heat shock factor protein 1
5d5u_B6e-251010129131Heat shock factor protein 1
5d5v_B6e-251010129131Heat shock factor protein 1
5d5v_D6e-251010129131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX553470.0X55347.1 Tomato mRNA for heat stress transcription factor HSF24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001308379.10.0heat shock factor protein HSF24
SwissprotP223350.0HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A3Q7FBZ50.0A0A3Q7FBZ5_SOLLC; Uncharacterized protein
STRINGSolyc02g090820.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99912127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.14e-84heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]