PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g006910.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 248aa    MW: 28034.1 Da    PI: 8.4862
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g006910.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.5e-1180130355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           h  +Er+RR+++   ++ Lr+llP       ++K s ++   +A +YIk++q
  Sopim03g006910.0.1  80 IIHRDIERQRRQEMAALYSSLRSLLPLqY---VKGKRSVSDHMHEAANYIKEMQ 130
                         5699***********************66...9*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.60E-876130No hitNo description
PROSITE profilePS5088812.68477129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1278149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-1081151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-881130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MFSLQGSDDL LIQILSNTCQ QNKSSLDAVM DFASTDTITR THIPPNINSQ KKIISKRKLS  60
THSNKNDGIA SDDHFKLKKI IHRDIERQRR QEMAALYSSL RSLLPLQYVK GKRSVSDHMH  120
EAANYIKEMQ GNIKELEKRR DLLMKSIRHG NENADKNNRF TDCTVTVSPW LQEGIEISIS  180
VDCEGKTFPL SKILGELLKQ GLNVVSCVSA KADQRSLYSI HTEACDMNNI DHLALQQKVI  240
DMINLDL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234146.10.0transcription factor bHLH120-like
TrEMBLA0A3Q7FDI60.0A0A3Q7FDI6_SOLLC; Uncharacterized protein
STRINGSolyc03g006910.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.12e-39bHLH family protein