PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g007020.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 216aa    MW: 24702 Da    PI: 9.2064
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g007020.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.38.1e-1353100249
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                         +ien+  r++tfskRr ++ KKA+EL    d++v + +fs+t+k y +
  Sopim03g007020.0.1  53 KIENEDARYTTFSKRRSTLYKKASELVGKYDVDVGITLFSPTDKPYSF 100
                         59****************************************998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-1644103IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.23644104IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-1945123IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-94666IPR002100Transcription factor, MADS-box
PfamPF003191.6E-1853100IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-96681IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-981102IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGSKIRGLTL SNHETFSQVF LPINLFFRKN ILHQKLSHGK KKTLGRQKIS MVKIENEDAR  60
YTTFSKRRST LYKKASELVG KYDVDVGITL FSPTDKPYSF FHPTVDVVVD RILNPNTQPS  120
EDNSIAIASY RNKVKDQKVE LDELDIIERG ISNSTFGTKE TNMKNIWESF MKFNEDEVNE  180
LELWLNSIDF DLKNYLSQLE NNVSSSTQAP PKNVG*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025886043.11e-118agamous-like MADS-box protein AGL62
TrEMBLM1DGC14e-82M1DGC1_SOLTU; Uncharacterized protein
STRINGSolyc03g007020.1.11e-157(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-22AGAMOUS-like 61