PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g034260.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 185aa    MW: 21422 Da    PI: 6.1409
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g034260.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.83.7e-101660246
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                        +ien+    vtf +Rr  +   A+EL   Cd+++ +++fs++++ 
  Sopim03g034260.0.1 16 KIENQHVSDVTFFNRRSSLYRMANELVDFCDVDIGIVLFSPSNHP 60
                        79***************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.264767IPR002100Transcription factor, MADS-box
SMARTSM004326.1E-5766IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-6929IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-15981IPR002100Transcription factor, MADS-box
PfamPF003191.1E-131663IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-62944IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-64465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MDSKKTRVRQ TFPISKIENQ HVSDVTFFNR RSSLYRMANE LVDFCDVDIG IVLFSPSNHP  60
FSFFHPTSEA VIERFLNPDS QLSEKTRLDA EQARNKVNQL NNRLDAMEKR IEQIEEIEHA  120
QTLLQLSQTE ENGERSKWKS IDQLNANEIP TFEAWLRTTV SKMNYRLEKL ENEASSLKNA  180
RGTS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234621.11e-133agamous-like MADS-box protein AGL29
TrEMBLA0A3Q7FG091e-132A0A3Q7FG09_SOLLC; Uncharacterized protein
STRINGSolyc03g034260.1.11e-133(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-09AGAMOUS-like 29