PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g044460.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 147aa    MW: 16746.5 Da    PI: 10.2484
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g044460.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.45.9e-0970111854
                         HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         + r RR++i +++  L++l+P       +K++ a++L +Av+Y+k L
  Sopim03g044460.0.1  70 AARHRREKISEKIRILQRLVPGG-----TKMDTASMLDEAVHYVKFL 111
                         5699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.35162111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-1563130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.17E-1064116No hitNo description
SuperFamilySSF474591.13E-1465123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-1368117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-671111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MDLNEITQSI NNIEMIQLLP IHNSSSIDHV TMREMIFGIA MMQPIKIDPE SVKPPKRKNV  60
KISKDPRSVA ARHRREKISE KIRILQRLVP GGTKMDTASM LDEAVHYVKF LKKQLKSLEQ  120
ATTACSNDRN NNRFVSGFNQ CPHNCY*
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2330610.0AC233061.1 Solanum lycopersicum chromosome 9 clone C09HBa0037P10, complete sequence.
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170922.13e-67PREDICTED: transcription factor HEC2-like
SwissprotQ9SND42e-42HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A3Q7FJI61e-103A0A3Q7FJI6_SOLLC; Uncharacterized protein
STRINGSolyc03g044460.1.11e-104(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.18e-45bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]