PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim03g045030.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 184aa MW: 21240.9 Da PI: 10.7842

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim03g045030.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	97.7	2.1e-30	75	174	3	100
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 +++++ ki T++g+RdRR+Rls++ a++fFdLq+ LGfdk+skti+WL++ ++ a elt+ s+ + ++ ++s s+s+++++ +k+++ Sopim03g045030.0.1 75 KRERSCGKILTAQGPRDRRIRLSINMARKFFDLQELLGFDKPSKTIDWLFTHSELALEELTNWSTHQTHRPkISGSLSKSNQQQGFRKKSQ 165 4666778*******************************************************97666644443333333333333332222 PP TCP 93 saa.kskks 100 +++ ++ k+ Sopim03g045030.0.1 166 KSKrSNTKR 174 222122222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.025	75	134	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.6E-28	81	172	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MFSASNSSTH DNPLPHYISS SFHTSSPFLG FTGNQILLHQ YYQNQFSSHY YLAKNNEDYC 60 DNSLRSFPMK KKSKKRERSC GKILTAQGPR DRRIRLSINM ARKFFDLQEL LGFDKPSKTI 120 DWLFTHSELA LEELTNWSTH QTHRPKISGS LSKSNQQQGF RKKSQKSKRS NTKRVKEKGK 180 STS*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	0.0	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010317815.1	1e-107	transcription factor CYCLOIDEA
Swissprot	Q9SBV6	3e-26	CYCLD_ANTLN; Transcription factor CYCLOIDEA (Fragment)
TrEMBL	K4BGB5	1e-132	K4BGB5_SOLLC; Uncharacterized protein
STRING	Solyc03g045030.1.1	1e-133	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4333	22	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	8e-22	TCP domain protein 12

Publications ? help Back to Top
Vieira CP,Vieira J,Charlesworth D Evolution of the cycloidea gene family in Antirrhinum and Misopates. Mol. Biol. Evol., 1999. 16(11): p. 1474-83 [PMID:10555278] Gubitz T,Caldwell A,Hudson A Rapid molecular evolution of CYCLOIDEA-like genes in Antirrhinum and its relatives. Mol. Biol. Evol., 2003. 20(9): p. 1537-44 [PMID:12832647]