PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim03g062820.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

M-type_MADS

Protein Properties

Length: 146aa MW: 16350.8 Da PI: 9.2307

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim03g062820.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.2	3.8e-17	12	59	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i ks r vtfskRrng++KK eEL L++ +v+ +++s+ g++y+y Sopim03g062820.0.1 12 KITKKSCRMVTFSKRRNGLFKKNEELESLTGSQVSSVVLSPAGRIYTY 59 68999******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-16	3	62	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	20.717	3	63	IPR002100	Transcription factor, MADS-box
CDD	cd00120	6.11E-18	4	60	No hit	No description
SuperFamily	SSF55455	3.01E-17	4	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-14	5	25	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.8E-19	12	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-14	25	40	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-14	40	61	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MGTGKKKIEM EKITKKSCRM VTFSKRRNGL FKKNEELESL TGSQVSSVVL SPAGRIYTYG 60 DVNTAINMHF SKIDCMRQSD SDVVVSSGSS ELRSSSKSLR DWLEDIDVEQ CQNLNQLLLL 120 KEQLEGTKKK IVSIEDSKSF QALFM*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	0.0	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004234880.1	1e-102	agamous-like MADS-box protein AGL62
TrEMBL	A0A3Q7FKZ6	1e-100	A0A3Q7FKZ6_SOLLC; Uncharacterized protein
STRING	Solyc03g062820.1.1	1e-101	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2337	17	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72350.1	2e-12	M-type_MADS family protein