PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g063200.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 164aa    MW: 17480 Da    PI: 10.2252
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g063200.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.11.7e-0991116227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt++C+ f     Ck+Gd+C+FaHg+
  Sopim03g063200.0.1  91 KTKICSKFNTAEGCKFGDKCRFAHGE 116
                         89**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.63461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.4083462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-63560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-73659IPR000571Zinc finger, CCCH-type
PfamPF146080.194259No hitNo description
Gene3DG3DSA:4.10.1000.101.8E-1387119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-888119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.24989117IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-489116IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-791116IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MEIRKRNRNE SGFNGNAGFK KAKPEMDSLS SGIGSKSKPC TKFFSTVGCS FGENCHFLHY  60
VPGGYNVVAK MMNIAPSPAS PIPSGNTPAV KTKICSKFNT AEGCKFGDKC RFAHGEWEIG  120
KPIVPSPRAM GVGPIPDRFG GRRESPVASF AHLLADRSQT GNP*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2472251e-179AC247225.6 Solanum lycopersicum strain Heinz 1706 chromosome 3 clone sle-5g9 map 3, complete sequence.
GenBankHG9755151e-179HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234819.11e-106zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-42C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A3Q7FL701e-105A0A3Q7FL70_SOLLC; Uncharacterized protein
STRINGSolyc03g063200.2.11e-117(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1996433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.15e-31C3H family protein