PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim03g082840.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 259aa MW: 28102 Da PI: 8.4572

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim03g082840.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.4	1.8e-39	31	91	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s+ Sopim03g082840.0.1 31 KEQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSN 91 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	24	83	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-33	33	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.003	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MDTSPQWPQG IGIVKGVDEA KLDQRKPRPQ KEQAVNCPRC NSTNTKFCYY NNYSLTQPRY 60 FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS NSISISSSST TSSLSLSSSS KKLFTDLANP 120 NDLNLTYNPI PSGGTTTTTA TNFSNFSDFM ALPLIHPSAN SASTFMTSSN LYPSSTTGIS 180 NLHDLKSSNG INFSLDGFEN GYGSLPSHQE AKLFFPMDDL KINVSTVGDE QFEENRGQAA 240 DQSNGFWNGM LGGGGTSW*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	0.0	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004234992.1	0.0	dof zinc finger protein DOF4.6 isoform X1
TrEMBL	A0A3Q7FMT8	0.0	A0A3Q7FMT8_SOLLC; Uncharacterized protein
STRING	Solyc03g082840.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	5e-38	Dof family protein