PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g093530.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 119aa    MW: 13197.7 Da    PI: 9.0291
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g093530.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.8e-1672114247
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 
                         +y+GVr+++ +g+++AeIrdp++ g   r++lg++ t  +Aa+a++
  Sopim03g093530.0.1  72 QYRGVRRRP-WGKYAAEIRDPTWKG--SRVWLGTYETDVDAARAYD 114
                         7********.**********99965..**********99******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.11E-2071118No hitNo description
Gene3DG3DSA:3.30.730.107.8E-2371117IPR001471AP2/ERF domain
PfamPF008471.8E-972115IPR001471AP2/ERF domain
PROSITE profilePS5103219.98172118IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1672117IPR016177DNA-binding domain
SMARTSM003801.6E-1372118IPR001471AP2/ERF domain
PRINTSPR003676.4E-107384IPR001471AP2/ERF domain
PRINTSPR003676.4E-1096112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MISKEEEKLT LQLIREHLLG DSFIHYHPIP RVNTSDGHSS IPTTSSVGSN PDRKFSGSGN  60
GSSPADEGTK KQYRGVRRRP WGKYAAEIRD PTWKGSRVWL GTYETDVDAA RAYDCVAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1871118451ATERF1
3gcc_A1e-1871118451ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755151e-128HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069273.16e-65ethylene-responsive transcription factor ERF106-like
TrEMBLA0A3Q7FNR77e-45A0A3Q7FNR7_SOLLC; Uncharacterized protein
STRINGSolyc03g093530.1.11e-83(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-25ERF family protein