PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g093870.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 175aa    MW: 19939.1 Da    PI: 9.3053
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g093870.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46.1e-0680102123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cgk F +   L  H+r+H
  Sopim03g093870.0.1  80 HECSICGKKFATGQALGGHMRKH 102
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551104059IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-74260IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.7E-673105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.61E-778105No hitNo description
PROSITE profilePS5015711.21980107IPR007087Zinc finger, C2H2
SMARTSM003550.002980102IPR015880Zinc finger, C2H2-like
PfamPF139123.8E-1180104IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MNMMLKRSKV EEESVEKFAM ANCADIMKRN ELLERPNLIF KCKKRFESFQ ALGGHMTSHK  60
NKLTTMSTNG ELLHVNLQKH ECSICGKKFA TGQALGGHMR KHQDELNQLE HKKKKKMKLD  120
ESLIKSGREL AEALNSKSDE LHDKLDLESS KRTLFLGLNL DLNLTIDENE LRTG*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235433.21e-122zinc finger protein ZAT11-like
TrEMBLA0A3Q7FLI41e-121A0A3Q7FLI4_SOLLC; Uncharacterized protein
STRINGSolyc03g093870.1.11e-121(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.13e-18C2H2 family protein