PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g098320.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 459aa    MW: 49764.5 Da    PI: 5.3748
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g098320.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.5e-155599147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        r +WT+eE++++++a k++G   W+ I +++g  +t+ q++s+ qk+
  Sopim03g098320.0.1 55 REKWTEEEHQRFLEALKLYGRA-WRQIEEYVG-SKTAIQIRSHAQKF 99
                        789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-1649103IPR009057Homeodomain-like
PROSITE profilePS5129421.17950104IPR017930Myb domain
TIGRFAMsTIGR015572.3E-1753102IPR006447Myb domain, plants
SMARTSM007173.6E-1254102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-85595IPR009057Homeodomain-like
PfamPF002491.7E-125598IPR001005SANT/Myb domain
CDDcd001673.75E-957100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MVADAVNQVE GSQQGASSMI SSKLETVATQ GKAPTCLANE NVLKARKPYT ITKQREKWTE  60
EEHQRFLEAL KLYGRAWRQI EEYVGSKTAI QIRSHAQKFF AKVARDSGND GDESLNAIDI  120
PPPRPKKKPL HPYPRKMADS SIANKAVSGQ PERSPSPNAS GRESCSPDSV LPAIGLGIAE  180
YSVAEQQNSR FSPVSCTTDA HTANIISAEN DDESMSSNSN NVDAIHVTLK PVAASISLIT  240
NSEFMECNIV HMENSCNGEK LAVEPPSASI KLFGKTVFVP DANNLAPPAP YNTEKEKEIS  300
NEDVLHGFQA NQANSPFVLA MVPGNMIPPA SWLSQNMLEN NRESTAAFPA ATISWWSWYQ  360
DLLYRSISSC GQTTVEAASH CQGLKDEEPQ REGSSTGSSI GSASEVDDGN TSCETVESKC  420
TTKIKGFVPY KRCLAERDGK SSGAVLEERE SQRVRVCS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235390.10.0protein REVEILLE 7
TrEMBLA0A3Q7FNA00.0A0A3Q7FNA0_SOLLC; Uncharacterized protein
STRINGSolyc03g098320.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74472127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.13e-36MYB_related family protein