PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g112430.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 197aa    MW: 22118.3 Da    PI: 8.1217
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g112430.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.46e-4410108199
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrrkC ++C+++pyfp e+p+kf nvhk+FGasnv+kll++l++++reda++sl+yeAear+rdPvyG+vg i+ lq+q+e+l+
  Sopim03g112430.0.1  10 PCAACKFLRRKCLPGCIFSPYFPPEEPQKFINVHKIFGASNVTKLLNELHPNQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVERLQ 100
                         7****************************************************************************************** PP

              DUF260  92 aelallke 99 
                         +el+++++
  Sopim03g112430.0.1 101 KELDAANA 108
                         ***99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.5889110IPR004883Lateral organ boundaries, LOB
PfamPF031956.6E-4310107IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MASSSSYNSP CAACKFLRRK CLPGCIFSPY FPPEEPQKFI NVHKIFGASN VTKLLNELHP  60
NQREDAVNSL AYEAEARVRD PVYGCVGAIS FLQRQVERLQ KELDAANADL IRYACNEFTS  120
STAPPPLPVH QNTILRQRSV EFTRRQYHHD VGAGGGGGFY QTSSYPIPRI RILTLIGMII  180
KTLPEIIINI SMEEEVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-6731294128LOB family transfactor Ramosa2.1
5ly0_B3e-6731294128LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00581DAPTransfer from AT5G63090Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010319004.11e-123LOB domain-containing protein 25-like
SwissprotQ9FML46e-70LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A3Q7GEP81e-122A0A3Q7GEP8_SOLLC; Uncharacterized protein
STRINGSolyc03g112430.1.11e-123(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.49e-73LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  2. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]