PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim03g113110.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 85aa MW: 9730.13 Da PI: 8.9713

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim03g113110.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.9	3.2e-13	33	77	1	45
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeek 45 kfY +YA++ GFsvrk++ ++s+++++i+ +fvCskeg+r ++ Sopim03g113110.0.1 33 KFYLDYAHRNGFSVRKNRISRSRKDKSIIGPEFVCSKEGFRLKKC 77 6***************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.1E-11	33	77	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
MNAVVSFVPQ LGEQELREPY IGMEFQSLDT GFKFYLDYAH RNGFSVRKNR ISRSRKDKSI 60 IGPEFVCSKE GFRLKKCNQA CNCD*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC238478	1e-140	AC238478.1 Solanum lycopersicum chromosome 3 clone C03SLm0111H07, complete sequence.
GenBank	HG975515	1e-140	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019068484.1	3e-46	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_025884696.1	7e-48	protein FAR1-RELATED SEQUENCE 11-like
Refseq	XP_025884722.1	4e-47	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025884850.1	4e-46	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025888960.1	5e-45	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3Q7IST4	3e-51	A0A3Q7IST4_SOLLC; Uncharacterized protein
TrEMBL	V9GZJ3	7e-55	V9GZJ3_SOLLC; Uncharacterized protein
STRING	Solyc03g113110.1.1	7e-57	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-15	FAR1 family protein