PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g113360.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 304aa    MW: 33912.7 Da    PI: 5.5965
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g113360.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.61.5e-36101091101
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         aCaaCk++rr+C  dC+lapyfpa+qpk f+n+h+lFG+sn+lk+l++l++++++ am+s++y+A+ar + PvyG+v+ i++l  +++  +
  Sopim03g113360.0.1  10 ACAACKYQRRRCH-DCPLAPYFPADQPKMFQNAHRLFGVSNILKILRQLDPSQKKVAMRSIIYQANARDKYPVYGCVAEIQNLLYNIQFYE 99 
                         7***********6.8**************************************************************************** PP

              DUF260  92 aelallkeel 101
                         +el++++++l
  Sopim03g113360.0.1 100 EELQAVNAQL 109
                         ****999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.1979109IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-3510106IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MTLKGGTSQA CAACKYQRRR CHDCPLAPYF PADQPKMFQN AHRLFGVSNI LKILRQLDPS  60
QKKVAMRSII YQANARDKYP VYGCVAEIQN LLYNIQFYEE ELQAVNAQLT FYRQQQQQQE  120
ISTSLSDSVS QIQLGMPPPV SASTPANGNG LTLFHQDIHQ DMTSPYNVAA NAVLPVQSYP  180
SYSNNNYAAY NNTTFVDPKE NNAVNSLWIQ QSYGNNVCNN NIMQSQLPAS QTLVVPQEVT  240
QDYDGIHPYF DGIDDRQSYN GSKDAYESSS ESSLKDTRQS MEHVAENELK NAAACFTLTS  300
ING*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-2661127114LOB family transfactor Ramosa2.1
5ly0_B2e-2661127114LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236523.10.0LOB domain-containing protein 27
TrEMBLM1B0F50.0M1B0F5_SOLTU; Uncharacterized protein
STRINGSolyc03g113360.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-51LOB domain-containing protein 27