PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g113560.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 103aa    MW: 11444.1 Da    PI: 5.6596
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g113560.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.000263322255
                        HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         L++l+P +    +k   Ka +L + ++YI+sLq
  Sopim03g113560.0.1  3 ILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 32
                        699999999....6669****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.864131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-11250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-10250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MKILQDLVPG CNKVIGKALV LDEIINYIQS LQRQVEFLSM KLEAVNSRMN HPIETFPSKD  60
LAPSAFDTSG MIFGTQAPRE YAQGTQSEWL HMQVGNSFDR AT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755153e-65HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236164.11e-71transcription factor BHLH089 isoform X3
SwissprotQ84T086e-47BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A3Q7GFI98e-70A0A3Q7GFI9_SOLLC; Uncharacterized protein
STRINGSolyc03g113560.2.15e-72(Solanum lycopersicum)
STRINGPGSC0003DMT4000628442e-69(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.14e-49BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]