PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g114400.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YB
Protein Properties Length: 133aa    MW: 14869.7 Da    PI: 4.2645
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g114400.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB54.62.6e-172672186
               NF-YB 21 lPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86
                        lP + ++++d+++++ ec +efi +++se+++ c+re+++ti+++ +l al  lGf +y e++ + 
  Sopim03g114400.0.1  2 LPPDVRVARDTQDLLIECCVEFINLISSESNEVCNREDKRTIAPEHVLKALEVLGFGEYTEEVYAA 67
                        8999********************************************************988654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.7E-282112IPR009072Histone-fold
SuperFamilySSF471131.13E-243112IPR009072Histone-fold
PfamPF008084.3E-14452IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MLPPDVRVAR DTQDLLIECC VEFINLISSE SNEVCNREDK RTIAPEHVLK ALEVLGFGEY  60
TEEVYAAYEQ HKLETVDTVR AGKLSNNIAE MTEEEALAAQ QRMFAEARAR MNGVGTVPPK  120
QQDPETEQKL DC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B8e-29410830133Transcription Regulator NC2 beta chain
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755158e-91HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236100.13e-94protein Dr1 homolog
RefseqXP_010318905.13e-94protein Dr1 homolog
RefseqXP_015067469.17e-94protein Dr1 homolog isoform X1
RefseqXP_015067470.13e-94protein Dr1 homolog isoform X2
RefseqXP_027771652.17e-94protein Dr1 homolog isoform X1
RefseqXP_027771653.13e-94protein Dr1 homolog isoform X2
SwissprotP495923e-65NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A3Q7FRD57e-93A0A3Q7FRD5_SOLLC; Uncharacterized protein
STRINGSolyc03g114400.2.12e-93(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38202244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.42e-69nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]