PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim03g115850.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 327aa MW: 37545.4 Da PI: 8.5777

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim03g115850.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.3	3.5e-54	18	144	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL kkv + ++++ +i +vd++k+ePw+Lp k+k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkdke Sopim03g115850.0.1 18 LPPGFRFHPTDEELITHYLSKKVVDMNFSA-IAIGDVDMNKIEPWELPWKAKIGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGKDKE 107 79***********************999.88***********98999********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ +++lvg+kktLvfy+grap+gekt+Wv heyrle Sopim03g115850.0.1 108 IFR-GRSLVGMKKTLVFYRGRAPRGEKTNWVTHEYRLE 144 .999****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-61	13	168	IPR003441	NAC domain
PROSITE profile	PS51005	58.126	18	168	IPR003441	NAC domain
Pfam	PF02365	1.0E-27	19	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MENFSASVKM DDQQQMELPP GFRFHPTDEE LITHYLSKKV VDMNFSAIAI GDVDMNKIEP 60 WELPWKAKIG EKEWYFFCVR DKKYPTGLRT NRATAAGYWK ATGKDKEIFR GRSLVGMKKT 120 LVFYRGRAPR GEKTNWVTHE YRLEGRLSLN NLPKTVKNDW VICRVFQKTT GGKKIHISGL 180 VRANSDENEM VNTVLPPLTD SSPSHVHCFS NYVTTQKNQE NNMINSFNNS PNFPLLSNSI 240 DIFQRNSLPT SFTWNQNVPL QHNFPQPGSF PIQDPATLRN LLENYGHQSF KKETDMISVS 300 QETGISTDRN TEITSAQQDL DCFWTY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	11	174	10	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	11	174	10	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	11	174	10	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	11	174	10	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	11	174	13	174	NAC domain-containing protein 19
3swm_B	2e-55	11	174	13	174	NAC domain-containing protein 19
3swm_C	2e-55	11	174	13	174	NAC domain-containing protein 19
3swm_D	2e-55	11	174	13	174	NAC domain-containing protein 19
3swp_A	2e-55	11	174	13	174	NAC domain-containing protein 19
3swp_B	2e-55	11	174	13	174	NAC domain-containing protein 19
3swp_C	2e-55	11	174	13	174	NAC domain-containing protein 19
3swp_D	2e-55	11	174	13	174	NAC domain-containing protein 19
4dul_A	1e-55	11	174	10	171	NAC domain-containing protein 19
4dul_B	1e-55	11	174	10	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	0.0	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001308203.1	0.0	NAC domain-containing protein
Swissprot	Q9FLJ2	1e-124	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A3Q7FU25	0.0	A0A3Q7FU25_SOLLC; Uncharacterized protein
STRING	Solyc03g115850.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-123	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]