PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g115910.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 418aa    MW: 47247 Da    PI: 5.8215
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g115910.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.13.5e-215397145
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        kr e++snrq t++kRr gilKKA+E+SvLCd+++ +++fs+tgk
  Sopim03g115910.0.1 53 KRLESHSNRQSTYCKRRCGILKKAQEISVLCDIDIILLLFSPTGK 97
                        689****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.15645105IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-2345104IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-2246132IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-164767IPR002100Transcription factor, MADS-box
PfamPF003192.5E-1755100IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-166782IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-1682103IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MASFACAFCP LEFHISEPLP AFKLGSCPTS NPKFQSAPIC FFHRMGRVRL SVKRLESHSN  60
RQSTYCKRRC GILKKAQEIS VLCDIDIILL LFSPTGKPTL FQGGQSNFDE IIAKFAQLTP  120
QERAKRKLES LEVSLIFITT MCSPLAMLCC YFIIQVKVIT MLMVTLQTLR KTFKKLDNDI  180
GVPEFLDASD PSVEELHSQV KLLQSRLTDV EMRLNWWSNP DNINKVEDFA LMECALRESL  240
NAVHVRKLQK TTHLHLLMNS ELDGNTHQWH PENKILRMPF PQTPNILPQE NMGYFGDNSV  300
AESSHVQGSG EVDQARQDTT AMLDNGVLND LTSIACLRQQ LSEQYSYNPN EDLDLLERNM  360
LDPQSDANLK GYLMDYAFQR NFNLTRSVDS VNYSAVDAVA VPDFDEKSYA QPATSSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-1345132186MEF2 CHIMERA
6byy_B4e-1345132186MEF2 CHIMERA
6byy_C4e-1345132186MEF2 CHIMERA
6byy_D4e-1345132186MEF2 CHIMERA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068634.10.0agamous-like MADS-box protein AGL65 isoform X2
TrEMBLA0A3Q7FR610.0A0A3Q7FR61_SOLLC; Uncharacterized protein
STRINGSolyc03g115910.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76402124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.16e-56AGAMOUS-like 65