PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g116420.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 199aa    MW: 22465.2 Da    PI: 7.3822
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g116420.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.49e-075275326
                        S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                        + +Cr f + GtC+yG++C+  H+
  Sopim03g116420.0.1 52 QNICRQFKKWGTCPYGEKCCHLHS 75
                        568****************98887 PP
2zf-CCCH216.1e-07109134227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt+lC+ +     C yG++C FaHg+
  Sopim03g116420.0.1 109 KTKLCHQWEMKKRCFYGEKCIFAHGE 134
                         9***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0244976IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-74979IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3855077IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-45275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-85478IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-12103139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-8107138IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4107134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.361107135IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-4109134IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MSTPDNNLEI SGKRNEYSGN AECESLKKPI EENSRMAQEG NIPIVPTIHD RQNICRQFKK  60
WGTCPYGEKC CHLHSTDEGE PRESSAIILV NDSQDIGQPK APVNCTKLKT KLCHQWEMKK  120
RCFYGEKCIF AHGEAEMRSL DSSNPPESRS SADISSLSRN VLATNLESNE KQTIAQAKHR  180
PKLDDLKRNS RIYGDWIE*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1247420.0EU124742.1 Solanum lycopersicum chromosome 3 clone C03HBa0323D22, complete sequence.
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068281.11e-147zinc finger CCCH domain-containing protein 39-like
RefseqXP_025885922.11e-147zinc finger CCCH domain-containing protein 39-like
TrEMBLK4BLE41e-146K4BLE4_SOLLC; Uncharacterized protein
STRINGSolyc03g116420.1.11e-147(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130261320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-13C3H family protein