PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g120840.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 250aa    MW: 27133.1 Da    PI: 6.3639
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g120840.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.9e-1872120355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+ +++g
  Sopim03g120840.0.1  72 YRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAAVSIKG 120
                         9****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.24E-3170130No hitNo description
SuperFamilySSF541712.03E-2171129IPR016177DNA-binding domain
PROSITE profilePS5103223.23571128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-3171129IPR001471AP2/ERF domain
SMARTSM003801.6E-3671134IPR001471AP2/ERF domain
PfamPF008477.3E-1272119IPR001471AP2/ERF domain
PRINTSPR003671.9E-107283IPR001471AP2/ERF domain
PRINTSPR003671.9E-1094110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAEVEVQSSE ADSSNTTSSV SSSSSSSLSV NSMHKSVFDS SNKLPEEKKR RTKGTKKQKS  60
INNNSESRHQ IYRGVRMRSW GKWVSEIREP RKKSRIWLGT YPTAEMAARA HDVAAVSIKG  120
NSAILNFPHL IDSLPRPLSK SPRDIQAAAA LAASMRDPPS SSSSVSSSIT TTTSAGSEEL  180
CEIIELPNLE ESDDSKTDLT LSESVEGLLY SPWWADHSTD FCGYFLEQSA AGAGESLISC  240
SFETLKWAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-20691291273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14752KKRRTK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235656.10.0ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD33e-52DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A3Q7GKP51e-158A0A3Q7GKP5_SOLLC; Uncharacterized protein
STRINGSolyc03g120840.1.11e-180(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.15e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]