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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sopim04g008380.0.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
BBR-BPC |
| Protein Properties |
Length: 292aa MW: 32234.1 Da PI: 10.0524 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim04g008380.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 329.6 | 8.8e-101 | 2 | 274 | 9 | 301 |
GAGA_bind 9 rnkgyyepaaslkenlglqlmssiaerdaki...rernlalsekkaavaerd..........maflqrdkalaernkalverdnkllalll 86
rn+gyyep+ lk +lglqlmss+ +rdak+ r +n + + ++++++rd +++ rd+++++ ++k+l++ +
Sopim04g008380.0.1 2 RNWGYYEPS--LKGHLGLQLMSSMVDRDAKPyltRRENPIMLGANGVFHSRDsiipeaplshIDY-VRDSWINH--------RDKFLHMFP 81
9******99..**********************9777888*******************999999.99****99........789999999 PP
GAGA_bind 87 venslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177
+++++vl++++ +q++++p+++++ + +e+++++ke+ +k++ +++pk++kakk kk s+++k++
Sopim04g008380.0.1 82 G--------SPYTSVLPDASASTPMQMVQQPDTTKDV----------GVN-VEEPSVKKESGPSKRKTGGATPKAPKAKKSKKVSSAPKEN 153
3........4678899999999999994443332221..........122.334566677777777788899***********99999777 PP
GAGA_bind 178 vkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkkl 268
++++ r+k kks+d+vlng+++D+s +P+PvCsCtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRiagrKmSqgafkk+
Sopim04g008380.0.1 154 GNPSQ---RAKPAKKSMDIVLNGIDMDISVIPIPVCSCTGSPQQCYRWGCGGWQSACCTTSISMYPLPMSTKRRGARIAGRKMSQGAFKKV 241
77666...89********************************************************************************* PP
GAGA_bind 269 LekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
LekLaaeGy+++np+DL++hWAkHGtnkfvtir
Sopim04g008380.0.1 242 LEKLAAEGYNFANPIDLRTHWAKHGTNKFVTIR 274
********************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 292 aa
Download sequence Send
to blast |
MRNWGYYEPS LKGHLGLQLM SSMVDRDAKP YLTRRENPIM LGANGVFHSR DSIIPEAPLS 60
HIDYVRDSWI NHRDKFLHMF PGSPYTSVLP DASASTPMQM VQQPDTTKDV GVNVEEPSVK 120
KESGPSKRKT GGATPKAPKA KKSKKVSSAP KENGNPSQRA KPAKKSMDIV LNGIDMDISV 180
IPIPVCSCTG SPQQCYRWGC GGWQSACCTT SISMYPLPMS TKRRGARIAG RKMSQGAFKK 240
VLEKLAAEGY NFANPIDLRT HWAKHGTNKF VTIRLCDLCE GHIDSHKIYQ I*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982303 | 0.0 | FJ982303.1 Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC1) mRNA, complete cds. |
| GenBank | HG975516 | 0.0 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
