PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim04g011630.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GRAS

Protein Properties

Length: 171aa MW: 20017.2 Da PI: 9.5974

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim04g011630.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	149.5	3.1e-46	3	167	209	374
GRAS 209 qlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 + +llde+v ++s+rd vL+l+++l+P+v + + +n++ F +rf eal +ys++fd+lea++pre er vE+ ++gre++nvva Sopim04g011630.0.1 3 RFRNLLDETVVVNSPRDIVLNLIRKLNPDVYIQGIVNGAYNAPFFITRFREALFHYSSVFDMLEANIPREIPERLLVEKLIFGREAMNVVA 93 677899*********************************************************************************** PP GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ce aer+er et+++W+ r ++aGF+++pl+e++ ak ++ +++d + ++ + ++l++gWk+r ++++S W+ Sopim04g011630.0.1 94 CEAAERIERPETYKQWQVRNTRAGFRQLPLNEEILRMAKDRVKAYHKD-FVIDVDGHWLLQGWKGRIMYAASTWK 167 ******************************************77.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	25.795	1	148	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-43	3	167	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MYRFRNLLDE TVVVNSPRDI VLNLIRKLNP DVYIQGIVNG AYNAPFFITR FREALFHYSS 60 VFDMLEANIP REIPERLLVE KLIFGREAMN VVACEAAERI ERPETYKQWQ VRNTRAGFRQ 120 LPLNEEILRM AKDRVKAYHK DFVIDVDGHW LLQGWKGRIM YAASTWKAAL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-12	21	167	225	375	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975516	0.0	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004236732.1	1e-119	scarecrow-like protein 14
Swissprot	P0C883	2e-75	SCL33_ARATH; Scarecrow-like protein 33
TrEMBL	A0A3Q7G0P3	1e-118	A0A3Q7G0P3_SOLLC; Uncharacterized protein
STRING	Solyc04g011630.1.1	1e-123	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17486	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-77	GRAS family protein