PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g025030.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 136aa    MW: 15411 Da    PI: 10.372
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g025030.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.41.1e-141857443
                        -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        +n +n qvtfs R++g++KK +EL+ L +ae+ +++fs+ 
  Sopim04g025030.0.1 18 KNARNLQVTFSTRLAGLFKKSNELCMLFNAEIFIVVFSQG 57
                        899**********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.806759IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-11767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-16892IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-8929IPR002100Transcription factor, MADS-box
PfamPF003191.1E-141759IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-82944IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-84465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MTTRINKGRQ RVDMVKMKNA RNLQVTFSTR LAGLFKKSNE LCMLFNAEIF IVVFSQGDKG  60
VLCFDHPSVN PLAEGFFEWN LPQPHINVHN QHIVARKEGG TRDLSTKLMS LEAILEKEKN  120
CGQILIEIRK RANSL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237284.14e-97agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7G2Z79e-96A0A3Q7G2Z7_SOLLC; Uncharacterized protein
STRINGSolyc04g025030.1.12e-96(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2749322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-27AGAMOUS-like 62