PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g025110.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 131aa    MW: 14313.7 Da    PI: 10.2617
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g025110.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.73.1e-181858444
                        -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
              SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                        +n +n qvtfskR++g+lKKA EL+ LC+a++ ++ fs+++
  Sopim04g025110.0.1 18 KNARNLQVTFSKRLAGLLKKALELCMLCGAKIIIVAFSPSD 58
                        899***********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.0E-16767IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.437757IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.1E-17988IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-10929IPR002100Transcription factor, MADS-box
PfamPF003192.2E-171758IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-102944IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-104465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MATRINKGSQ RVDMVKMKNA RNLQVTFSKR LAGLLKKALE LCMLCGAKII IVAFSPSDNG  60
DFSFGPTSIS PSVERFLGRK FPQPNNDVHN QQIVALIEGG ICELNTKLRN LEGILEMEIN  120
RGPSLGELGR *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2357970.0AC235797.1 Solanum lycopersicum chromosome 3 clone C03HBa0065A22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237288.19e-91agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7G1I32e-89A0A3Q7G1I3_SOLLC; Uncharacterized protein
STRINGSolyc04g025110.1.13e-90(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2749522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-24AGAMOUS-like 62