PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim04g025970.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

M-type_MADS

Protein Properties

Length: 118aa MW: 13333.4 Da PI: 10.1618

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim04g025970.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	29.7	8.1e-10	15	63	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ie k r+ +f kRr + KKA+EL d+++ v i s+tgk y + Sopim04g025970.0.1 15 EKIEKKVARYASFFKRRLCLYKKASELIQERDVDIGVFISSQTGKPYSF 63 579******************************************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	14.563	7	67	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.0E-5	7	66	IPR002100	Transcription factor, MADS-box
CDD	cd00120	1.75E-14	8	65	No hit	No description
PRINTS	PR00404	1.5E-5	9	29	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.14E-15	10	83	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.3E-13	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-5	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-5	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MEGKKKAGCQ RIPLEKIEKK VARYASFFKR RLCLYKKASE LIQERDVDIG VFISSQTGKP 60 YSFVHQTANV VINHFKSPTT IDLGAQFAGA EARNNVIQMN DMLNDFDARE KVTKNHI*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU927991	0.0	CU927991.8 S.lycopersicum DNA sequence from clone LE_HBa-27J19, complete sequence.
GenBank	HG975516	0.0	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015162384.1	1e-45	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	M1DQR0	1e-57	M1DQR0_SOLTU; Uncharacterized protein
STRING	Solyc04g025970.1.1	4e-83	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA20843	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	7e-13	AGAMOUS-like 61