PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g050080.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 82aa    MW: 9791.36 Da    PI: 10.3723
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g050080.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.5e-15853147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        + rW + Ed+ll ++v+++G ++W++I + +  gR+ k+c+ rw + 
  Sopim04g050080.0.1  8 KRRWNPKEDDLLQKLVEEHGEKNWSLIVQLIL-GRSKKSCRFRWCNQ 53
                        579****************************9.***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-19257IPR009057Homeodomain-like
PROSITE profilePS5129421.372358IPR017930Myb domain
SuperFamilySSF466892.76E-20580IPR009057Homeodomain-like
SMARTSM007173.7E-13756IPR001005SANT/Myb domain
CDDcd001673.51E-111052No hitNo description
PfamPF139211.5E-161168No hitNo description
Gene3DG3DSA:1.10.10.604.0E-65880IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MKKKSMIKRR WNPKEDDLLQ KLVEEHGEKN WSLIVQLILG RSKKSCRFRW CNQLNPQVDR  60
RPFTLDEDDI IIKDHAKFGN Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-16681277MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-16681277C-Myb DNA-Binding Domain
1msf_C3e-16681277C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755161e-130HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027772392.12e-46transcription factor MYB77-like
SwissprotO231601e-29MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A3Q7GVU82e-52A0A3Q7GVU8_SOLLC; Uncharacterized protein
STRINGSolyc04g050080.1.14e-53(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1853624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.16e-32myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]