PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g050090.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 79aa    MW: 9193.68 Da    PI: 9.9305
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g050090.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.9e-09836129
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                        + rW  eEdell ++v+++G ++W++I +
  Sopim04g050090.0.1  8 KRRWNREEDELLQKLVEEHGVKNWSLIGQ 36
                        579***********************975 PP
2Myb_DNA-binding30.87e-104077948
                        HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        d+ +++a++++G++  + Ia  +  gRt+k +k++w+++l
  Sopim04g050090.0.1 40 DDTIIKAHAKFGNE-LSMIACLLS-GRTDKAIKNHWNSFL 77
                        7899**********.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.427178IPR017930Myb domain
SuperFamilySSF466893.75E-16573IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-8636IPR009057Homeodomain-like
SMARTSM007171.6E-4778IPR001005SANT/Myb domain
PfamPF002498.1E-7836IPR001005SANT/Myb domain
CDDcd001674.67E-81077No hitNo description
Gene3DG3DSA:1.10.10.605.4E-124077IPR009057Homeodomain-like
PfamPF002497.5E-74076IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MKKISMIKRR WNREEDELLQ KLVEEHGVKN WSLIGQWIQD DTIIKAHAKF GNELSMIACL  60
LSGRTDKAIK NHWNSFLT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755162e-59HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159289.11e-26PREDICTED: transcription factor MYB44-like
SwissprotO231603e-21MYB73_ARATH; Transcription factor MYB73
TrEMBLK4BRY21e-49K4BRY2_SOLLC; Uncharacterized protein
STRINGSolyc04g050090.1.12e-50(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2761122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-23myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]