PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g050750.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 162aa    MW: 17949 Da    PI: 5.3838
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g050750.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.5e-193786255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+GVr++  +g+WvAeIr+p  ng  +r++lg+f t  eAa+a++ a+++l+g
  Sopim04g050750.0.1 37 TYRGVRQRT-WGKWVAEIREP--NG-GARIWLGTFNTSVEAARAYDDAARRLYG 86
                        69****999.**********9..33.5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.02E-193696No hitNo description
PfamPF008479.1E-143786IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-213794IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.4E-303795IPR001471AP2/ERF domain
PROSITE profilePS5103221.5493794IPR001471AP2/ERF domain
SMARTSM003803.8E-3537100IPR001471AP2/ERF domain
PRINTSPR003671.3E-103849IPR001471AP2/ERF domain
PRINTSPR003671.3E-106076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEECGKSRIE SVESKRKSRS RKGCMRGKGG PENASCTYRG VRQRTWGKWV AEIREPNGGA  60
RIWLGTFNTS VEAARAYDDA ARRLYGSDAK LNLSEQESTD VGIIEDGDGE CSVLEEASIF  120
KDGNGKYLVW DTPAPSLLGV DFHGDATTCF NWKNQTEMMY F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-163893359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-163893662ATERF1
3gcc_A1e-163893662ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9157400.0CU915740.3 S.lycopersicum DNA sequence from clone LE_HBa-103J9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237644.11e-117dehydration-responsive element-binding protein 2G-like
TrEMBLA0A3Q7GW631e-116A0A3Q7GW63_SOLLC; Uncharacterized protein
STRINGSolyc04g050750.1.11e-117(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-26ERF family protein