PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g056550.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 183aa    MW: 20838.7 Da    PI: 5.1435
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g056550.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.31.5e-161663249
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        +ienk    +tfskRr+g++KKA+E+ + Cd+++ ++++s++gk + +
  Sopim04g056550.0.1 16 KIENKNALLTTFSKRRKGLFKKASEVVTECDVDIGIMMISPSGKPHSF 63
                        79*****************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-24766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.619767IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-22877IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-11929IPR002100Transcription factor, MADS-box
PfamPF003192.3E-201663IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-112944IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-114465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MERKKTKGRQ KIPMQKIENK NALLTTFSKR RKGLFKKASE VVTECDVDIG IMMISPSGKP  60
HSFFHPTADA IVSRFQNPDM QLSEGIRLDA TTARNRVNQL KTRLEELDAI EDALFAQTIF  120
YDQMAETQQK SSWESIEQLD ADELIINEAW LRDTNFKICD RLSQLEIGAS SSLGCEFLEY  180
EV*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9905590.0CT990559.2 S.lycopersicum DNA sequence from clone LE_HBa-78E4 on chromosome 4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237586.31e-134agamous-like MADS-box protein AGL29
TrEMBLM1DVS11e-102M1DVS1_SOLTU; Uncharacterized protein
STRINGSolyc04g056550.1.11e-133(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.15e-23AGAMOUS-like 57